Jump to content

Pseudomonas

From Wikipedia, the free encyclopedia

Pseudomonas
P. aeruginosa colonies on an agar plate
Scientific classification Edit this classification
Domain: Bacteria
Phylum: Pseudomonadota
Class: Gammaproteobacteria
Order: Pseudomonadales
Family: Pseudomonadaceae
Genus: Pseudomonas
Migula 1894
Type species
Pseudomonas aeruginosa
Species

See text.

Synonyms
  • "Stutzerimonas" Lalucat et al. 2022[1]
  • Flavimonas Holmes et al. 1987
  • Chryseomonas Holmes et al. 1986
  • Serpens Hespell 1977 (Approved Lists 1980)

Pseudomonas is a genus of Gram-negative bacteria belonging to the family Pseudomonadaceae in the class Gammaproteobacteria. The 313 members of the genus[2][3] demonstrate a great deal of metabolic diversity and consequently are able to colonize a wide range of niches.[4] Their ease of culture in vitro and availability of an increasing number of Pseudomonas strain genome sequences has made the genus an excellent focus for scientific research; the best studied species include P. aeruginosa in its role as an opportunistic human pathogen, the plant pathogen P. syringae, the soil bacterium P. putida, and the plant growth-promoting P. fluorescens, P. lini, P. migulae, and P. graminis.[5][6]

Because of their widespread occurrence in water and plant seeds such as dicots, the pseudomonads were observed early in the history of microbiology. The generic name Pseudomonas created for these organisms was defined in rather vague terms by Walter Migula in 1894 and 1900 as a genus of Gram-negative, rod-shaped, and polar-flagellated bacteria with some sporulating species.[7][8] The latter statement was later proved incorrect and was due to refractive granules of reserve materials.[9] Despite the vague description, the type species, Pseudomonas pyocyanea (basionym of Pseudomonas aeruginosa), proved the best descriptor.[9]

Classification history

[edit]

Like most bacterial genera, the pseudomonad[note 1] last common ancestor lived hundreds of millions of years ago. They were initially classified at the end of the 19th century when first identified by Walter Migula. The etymology of the name was not specified at the time and first appeared in the seventh edition of Bergey's Manual of Systematic Bacteriology (the main authority in bacterial nomenclature) as Greek pseudes (ψευδής) "false" and -monas (μονάς/μονάδος) "a single unit", which can mean false unit; however, Migula possibly intended it as false Monas, a nanoflagellated protist[9] (subsequently, the term "monad" was used in the early history of microbiology to denote unicellular organisms). Soon, other species matching Migula's somewhat vague original description were isolated from many natural niches and, at the time, many were assigned to the genus. However, many strains have since been reclassified, based on more recent methodology and use of approaches involving studies of conservative macromolecules.[10]

Recently, 16S rRNA sequence analysis has redefined the taxonomy of many bacterial species.[11] As a result, the genus Pseudomonas includes strains formerly classified in the genera Chryseomonas and Flavimonas.[12] Other strains previously classified in the genus Pseudomonas are now classified in the genera Burkholderia and Ralstonia.[13][14]

In 2020, a phylogenomic analysis of 494 complete Pseudomonas genomes identified two well-defined species (P. aeruginosa and P. chlororaphis) and four wider phylogenetic groups (P. fluorescens, P. stutzeri, P. syringae, P. putida) with a sufficient number of available proteomes.[15] The four wider evolutionary groups include more than one species, based on species definition by the Average Nucleotide Identity levels.[16] In addition, the phylogenomic analysis identified several strains that were mis-annotated to the wrong species or evolutionary group.[15] This mis-annotation problem has been reported by other analyses as well.[17]

Genomics

[edit]

In 2000, the complete genome sequence of a Pseudomonas species was determined; more recently, the sequence of other strains has been determined, including P. aeruginosa strains PAO1 (2000), P. putida KT2440 (2002), P. protegens Pf-5 (2005), P. syringae pathovar tomato DC3000 (2003), P. syringae pathovar syringae B728a (2005), P. syringae pathovar phaseolica 1448A (2005), P. fluorescens Pf0-1, and P. entomophila L48.[10]

By 2016, more than 400 strains of Pseudomonas had been sequenced.[18] Sequencing the genomes of hundreds of strains revealed highly divergent species within the genus. In fact, many genomes of Pseudomonas share only 50-60% of their genes, e.g. P. aeruginosa and P. putida share only 2971 proteins out of 5350 (or ~55%).[18]

By 2020, more than 500 complete Pseudomonas genomes were available in Genebank. A phylogenomic analysis utilized 494 complete proteomes and identified 297 core orthologues, shared by all strains.[15] This set of core orthologues at the genus level was enriched for proteins involved in metabolism, translation, and transcription and was utilized for generating a phylogenomic tree of the entire genus, to delineate the relationships among the Pseudomonas major evolutionary groups.[15] In addition, group-specific core proteins were identified for most evolutionary groups, meaning that they were present in all members of the specific group, but absent in other pseudomonads. For example, several P. aeruginosa-specific core proteins were identified that are known to play an important role in this species' pathogenicity, such as CntL, CntM, PlcB, Acp1, MucE, SrfA, Tse1, Tsi2, Tse3, and EsrC.[15]

Characteristics

[edit]

Members of the genus display these defining characteristics:[19]

Other characteristics that tend to be associated with Pseudomonas species (with some exceptions) include secretion of pyoverdine, a fluorescent yellow-green siderophore[20] under iron-limiting conditions. Certain Pseudomonas species may also produce additional types of siderophore, such as pyocyanin by Pseudomonas aeruginosa[21] and thioquinolobactin by Pseudomonas fluorescens.[22] Pseudomonas species also typically give a positive result to the oxidase test, the absence of gas formation from glucose, glucose is oxidised in oxidation/fermentation test using Hugh and Leifson O/F test, beta hemolytic (on blood agar), indole negative, methyl red negative, Voges–Proskauer test negative, and citrate positive.[citation needed]

Pseudomonas may be the most common nucleator of ice crystals in clouds, thereby being of utmost importance to the formation of snow and rain around the world.[23]

Biofilm formation

[edit]

All species and strains of Pseudomonas have historically been classified as strict aerobes. Exceptions to this classification have recently been discovered in Pseudomonas biofilms.[24] A significant number of cells can produce exopolysaccharides associated with biofilm formation. Secretion of exopolysaccharides such as alginate makes it difficult for pseudomonads to be phagocytosed by mammalian white blood cells.[25] Exopolysaccharide production also contributes to surface-colonising biofilms that are difficult to remove from food preparation surfaces. Growth of pseudomonads on spoiling foods can generate a "fruity" odor.[citation needed]

Antibiotic resistance

[edit]

Most Pseudomonas spp. are naturally resistant to penicillin and the majority of related beta-lactam antibiotics, but a number are sensitive to piperacillin, imipenem, ticarcillin, or ciprofloxacin.[25] Aminoglycosides such as tobramycin, gentamicin, and amikacin are other choices for therapy.[citation needed]

This ability to thrive in harsh conditions is a result of their hardy cell walls that contain proteins known as porins. Their resistance to most antibiotics is attributed to efflux pumps, which pump out some antibiotics before they are able to act.[citation needed]

Pseudomonas aeruginosa is increasingly recognized as an emerging opportunistic pathogen of clinical relevance. One of its most worrying characteristics is its low antibiotic susceptibility.[26] This low susceptibility is attributable to a concerted action of multidrug efflux pumps with chromosomally encoded antibiotic resistance genes (e.g., mexAB-oprM, mexXY, etc.[27]) and the low permeability of the bacterial cellular envelopes. Besides intrinsic resistance, P. aeruginosa easily develops acquired resistance either by mutation in chromosomally encoded genes or by the horizontal gene transfer of antibiotic resistance determinants. Development of multidrug resistance by P. aeruginosa isolates requires several different genetic events that include acquisition of different mutations and/or horizontal transfer of antibiotic resistance genes. Hypermutation favours the selection of mutation-driven antibiotic resistance in P. aeruginosa strains producing chronic infections, whereas the clustering of several different antibiotic resistance genes in integrons favours the concerted acquisition of antibiotic resistance determinants. Some recent studies have shown phenotypic resistance associated to biofilm formation or to the emergence of small-colony-variants, which may be important in the response of P. aeruginosa populations to antibiotic treatment.[10]

Sensitivity to gallium

[edit]

Although gallium has no natural function in biology, gallium ions interact with cellular processes in a manner similar to iron(III). When gallium ions are mistakenly taken up in place of iron(III) by bacteria such as Pseudomonas, the ions interfere with respiration, and the bacteria die. This happens because iron is redox-active, allowing the transfer of electrons during respiration, while gallium is redox-inactive.[28][29]

Pathogenicity

[edit]

Animal pathogens

[edit]
Main article: Pseudomonas infection

Infectious species include P. aeruginosa, P. oryzihabitans, and P. plecoglossicida. P. aeruginosa flourishes in hospital environments, and is a particular problem in this environment, since it is the second-most common infection in hospitalized patients (nosocomial infections).[30] This pathogenesis may in part be due to the proteins secreted by P. aeruginosa. The bacterium possesses a wide range of secretion systems, which export numerous proteins relevant to the pathogenesis of clinical strains.[31] Intriguingly, several genes involved in the pathogenesis of P. aeruginosa, such as CntL, CntM, PlcB, Acp1, MucE, SrfA, Tse1, Tsi2, Tse3, and EsrC are core group-specific,[15] meaning that they are shared by the vast majority of P. aeruginosa strains, but they are not present in other Pseudomonads.

Plant pathogens

[edit]

P. syringae is a prolific plant pathogen. It exists as over 50 different pathovars, many of which demonstrate a high degree of host-plant specificity. Numerous other Pseudomonas species can act as plant pathogens, notably all of the other members of the P. syringae subgroup, but P. syringae is the most widespread and best-studied.[citation needed]

Fungus pathogens

[edit]

P. tolaasii can be a major agricultural problem, as it can cause bacterial blotch of cultivated mushrooms.[32] Similarly, P. agarici can cause drippy gill in cultivated mushrooms.[33]

Use as biocontrol agents

[edit]

Since the mid-1980s, certain members of the genus Pseudomonas have been applied to cereal seeds or applied directly to soils as a way of preventing the growth or establishment of crop pathogens. This practice is generically referred to as biocontrol. The biocontrol properties of P. fluorescens and P. protegens strains (CHA0 or Pf-5 for example) are currently best-understood, although it is not clear exactly how the plant growth-promoting properties of P. fluorescens are achieved. Theories include: the bacteria might induce systemic resistance in the host plant, so it can better resist attack by a true pathogen; the bacteria might outcompete other (pathogenic) soil microbes, e.g. by siderophores giving a competitive advantage at scavenging for iron; the bacteria might produce compounds antagonistic to other soil microbes, such as phenazine-type antibiotics or hydrogen cyanide. Experimental evidence supports all of these theories.[34]

Other notable Pseudomonas species with biocontrol properties include P. chlororaphis, which produces a phenazine-type antibiotic active agent against certain fungal plant pathogens,[35] and the closely related species P. aurantiaca, which produces di-2,4-diacetylfluoroglucylmethane, a compound antibiotically active against Gram-positive organisms.[36]

Use as bioremediation agents

[edit]

Some members of the genus are able to metabolise chemical pollutants in the environment, and as a result, can be used for bioremediation. Notable species demonstrated as suitable for use as bioremediation agents include:

Risks associated with pseudomonas

[edit]

Pseudomonas is a genus of bacteria known to be associated with several diseases affecting humans, plants, and animals.

Humans & Animals

[edit]

One of the most concerning strains of Pseudomonas is Pseudomonas aeruginosa, which is responsible for a considerable number of hospital-acquired infections. Numerous hospitals and medical facilities face persistent challenges in dealing with Pseudomonas infections. The symptoms of these infections are caused by proteins secreted by the bacteria and may include pneumonia, blood poisoning, and urinary tract infections.[46] Pseudomonas aeruginosa is highly contagious and has displayed resistance to antibiotic treatments, making it difficult to manage effectively. Some strains of Pseudomonas are known to target white blood cells in various mammal species, posing risks to humans, cattle, sheep, and dogs alike.[47]

Fish

[edit]

While Pseudomonas aeruginosa seems to be a pathogen that primarily affects humans, another strain known as Pseudomonas plecoglossicida poses risks to fish. This strain can cause gastric swelling and haemorrhaging in fish populations.[47]

Plants & Fungi

[edit]

Various strains of Pseudomonas are recognized as pathogens in the plant kingdom. Notably, the Pseudomonas syringae family is linked to diseases affecting a wide range of agricultural plants, with different strains showing adaptations to specific host species. In particular, the virulent strain Pseudomonas tolaasii is responsible for causing blight and degradation in edible mushroom species.[47]

Detection of food spoilage agents in milk

[edit]

One way of identifying and categorizing multiple bacterial organisms in a sample is to use ribotyping.[48] In ribotyping, differing lengths of chromosomal DNA are isolated from samples containing bacterial species, and digested into fragments.[48] Similar types of fragments from differing organisms are visualized and their lengths compared to each other by Southern blotting or by the much faster method of polymerase chain reaction (PCR).[48] Fragments can then be matched with sequences found on bacterial species.[48] Ribotyping is shown to be a method to isolate bacteria capable of spoilage.[49] Around 51% of Pseudomonas bacteria found in dairy processing plants are P. fluorescens, with 69% of these isolates possessing proteases, lipases, and lecithinases which contribute to degradation of milk components and subsequent spoilage.[49] Other Pseudomonas species can possess any one of the proteases, lipases, or lecithinases, or none at all.[49] Similar enzymatic activity is performed by Pseudomonas of the same ribotype, with each ribotype showing various degrees of milk spoilage and effects on flavour.[49] The number of bacteria affects the intensity of spoilage, with non-enzymatic Pseudomonas species contributing to spoilage in high number.[49]

Food spoilage is detrimental to the food industry due to production of volatile compounds from organisms metabolizing the various nutrients found in the food product.[50] Contamination results in health hazards from toxic compound production as well as unpleasant odours and flavours.[50] Electronic nose technology allows fast and continuous measurement of microbial food spoilage by sensing odours produced by these volatile compounds.[50] Electronic nose technology can thus be applied to detect traces of Pseudomonas milk spoilage and isolate the responsible Pseudomonas species.[51] The gas sensor consists of a nose portion made of 14 modifiable polymer sensors that can detect specific milk degradation products produced by microorganisms.[51] Sensor data is produced by changes in electric resistance of the 14 polymers when in contact with its target compound, while four sensor parameters can be adjusted to further specify the response.[51] The responses can then be pre-processed by a neural network which can then differentiate between milk spoilage microorganisms such as P. fluorescens and P. aureofaciens.[51]

Species

[edit]

Pseudomonas comprises the following species,[52] organized into genomic affinity groups:[53][54][55][56][57][58][59]

P. aeruginosa Group

[edit]

P. anguilliseptica Group

[edit]

P. fluorescens Group

[edit]

P. asplenii Subgroup

P. chlororaphis Subgroup

P. corrugata Subgroup

P. fluorescens Subgroup

P. fragi Subgroup

P. gessardii Subgroup

P. jessenii Subgroup

P. koreensis Subgroup

P. mandelii Subgroup

P. protegens Subgroup

incertae sedis

P. linyingensis Group

[edit]

P. lutea Group

[edit]

P. massiliensis Group

[edit]

P. oleovorans Group

[edit]

P. oryzihabitans Group

[edit]

P. pohangensis Group

[edit]

P. putida Group

[edit]

P. resinovorans Group

[edit]

P. rhizosphaerae Group

[edit]

P. straminea Group

[edit]

P. stutzeri Group

[edit]

P. syringae Group

[edit]

incertae sedis

[edit]

Species previously classified in the genus

[edit]

Recently, 16S rRNA sequence analysis redefined the taxonomy of many bacterial species previously classified as being in the genus Pseudomonas.[11] Species removed from Pseudomonas are listed below; clicking on a species will show its new classification. The term 'pseudomonad' does not apply strictly to just the genus Pseudomonas, and can be used to also include previous members such as the genera Burkholderia and Ralstonia.

α proteobacteria: P. abikonensis, P. aminovorans, P. azotocolligans, P. carboxydohydrogena, P. carboxidovorans, P. compransoris, P. diminuta, P. echinoides, P. extorquens, P. lindneri, P. mesophilica, P. paucimobilis, P. radiora, P. rhodos, P. riboflavina, P. rosea, P. vesicularis.

β proteobacteria: P. acidovorans, P. alliicola, P. antimicrobica, P. avenae, P. butanovora, P. caryophylli, P. cattleyae, P. cepacia, P. cocovenenans, P. delafieldii, P. facilis, P. flava, P. gladioli, P. glathei, P. glumae, P. huttiensis, P. indigofera, P. lanceolata, P. lemoignei, B. mallei, P. mephitica, P. mixta, P. palleronii, P. phenazinium, P. pickettii, P. plantarii, P. pseudoflava, B. pseudomallei, P. pyrrocinia, P. rubrilineans, P. rubrisubalbicans, P. saccharophila, P. solanacearum, P. spinosa, P. syzygii, P. taeniospiralis, P. terrigena, P. testosteroni.

γ-β proteobacteria: P. boreopolis, P. cissicola, P. geniculata, P. hibiscicola, P. maltophilia, P. pictorum.

γ proteobacteria: P. beijerinckii, P. diminuta, P. doudoroffii, P. elongata, P. flectens, P. marinus, P. halophila, P. iners, P. marina, P. nautica, P. nigrifaciens, P. pavonacea,[60] P. piscicida, P. stanieri.

δ proteobacteria: P. formicans.

Phylogenetics

[edit]

The following relationships between genomic affinity groups have been determined by phylogenetic analysis:[61][62]

Bacteriophages

[edit]

There are a number of bacteriophages that infect Pseudomonas, e.g.

See also

[edit]

Footnotes

[edit]
  1. ^ To aid in the flow of the prose in English, genus names can be "trivialised" to form a vernacular name to refer to a member of the genus: for the genus Pseudomonas it is "pseudomonad" (plural: "pseudomonads"), a variant on the non-nominative cases in the Greek declension of monas, monada.[67] For historical reasons, members of several genera that were formerly classified as Pseudomonas species can be referred to as pseudomonads, while the term "fluorescent pseudomonad" refers strictly to current members of the genus Pseudomonas, as these produce pyoverdin, a fluorescent siderophore.[4][page needed] The latter term, fluorescent pseudomonad, is distinct from the term P. fluorescens group, which is used to distinguish a subset of members of the Pseudomonas sensu stricto and not as a whole

References

[edit]
  1. ^ Lalucat, Jorge; Gomila, Margarita; Mulet, Magdalena; Zaruma, Anderson; García-Valdés, Elena (2021). "Past, present and future of the boundaries of the Pseudomonas genus: Proposal of Stutzerimonas gen. nov". Syst Appl Microbiol. 45 (1): 126289. doi:10.1016/j.syapm.2021.126289. hdl:10261/311157. PMID 34920232. S2CID 244943909.
  2. ^ Parte, Aidan C.; Sardà Carbasse, Joaquim; Meier-Kolthoff, Jan P.; Reimer, Lorenz C.; Göker, Markus (2020). "List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ". International Journal of Systematic and Evolutionary Microbiology. 70 (11): 5607–5612. doi:10.1099/ijsem.0.004332. PMC 7723251. PMID 32701423.
  3. ^ "Genus Pseudomonas". LPSN.dsmz.de. Retrieved 4 April 2023. Partial citation, see Parte et al., 2020 for project reference
  4. ^ a b Madigan M; Martinko J, eds. (2006). Brock Biology of Microorganisms (11th ed.). Prentice Hall. ISBN 0-13-144329-1.
  5. ^ Padda, Kiran Preet; Puri, Akshit; Chanway, Chris (2019-11-01). "Endophytic nitrogen fixation – a possible 'hidden' source of nitrogen for lodgepole pine trees growing at unreclaimed gravel mining sites". FEMS Microbiology Ecology. 95 (11). doi:10.1093/femsec/fiz172. ISSN 0168-6496. PMID 31647534.
  6. ^ Padda, Kiran Preet; Puri, Akshit; Chanway, Chris P. (2018-09-20). "Isolation and identification of endophytic diazotrophs from lodgepole pine trees growing at unreclaimed gravel mining pits in central interior British Columbia, Canada". Canadian Journal of Forest Research. 48 (12): 1601–1606. doi:10.1139/cjfr-2018-0347. hdl:1807/92505. ISSN 0045-5067. S2CID 92275030.
  7. ^ Migula, W. (1894) Über ein neues System der Bakterien. Arb Bakteriol Inst Karlsruhe 1: 235–238.
  8. ^ Migula, W. (1900) System der Bakterien, Vol. 2. Jena, Germany: Gustav Fischer.
  9. ^ a b c Palleroni, N. J. (2010). "The Pseudomonas Story". Environmental Microbiology. 12 (6): 1377–1383. Bibcode:2010EnvMi..12.1377P. doi:10.1111/j.1462-2920.2009.02041.x. PMID 20553550.
  10. ^ a b c Cornelis, Pierre, ed. (2008). Pseudomonas: Genomics and Molecular Biology (1st ed.). Caister Academic Press. ISBN 978-1-904455-19-6.
  11. ^ a b Anzai, Y.; Kim, H.; Park, J. Y.; Wakabayashi, H. (2000). "Phylogenetic affiliation of the pseudomonads based on 16S rRNA sequence". International Journal of Systematic and Evolutionary Microbiology. 50 (4): 1563–89. doi:10.1099/00207713-50-4-1563. PMID 10939664.
  12. ^ Anzai, Yojiro; Kudo, Yuko; Oyaizu, Hiroshi (1997). "The phylogeny of the genera Chryseomonas, Flavimonas, and Pseudomonas supports synonymy of these three genera". International Journal of Systematic Bacteriology. 47 (2): 249–251. doi:10.1099/00207713-47-2-249. PMID 9103607.
  13. ^ Yabuuchi, Eiko; Kosako, Yoshimasa; Oyaizu, Hiroshi; Yano, Ikuya; Hotta, Hisako; Hashimoto, Yasuhiro; Ezaki, Takayuki; Arakawa, Michio (1992). "Proposal of Burkholderia gen. Nov. And transfer of seven species of the genus Pseudomonas homology group II to the new genus, with the type species Burkholderia cepacia (Palleroni and Holmes 1981) comb. Nov". Microbiology and Immunology. 36 (12): 1251–1275. doi:10.1111/j.1348-0421.1992.tb02129.x. PMID 1283774. S2CID 46648461.
  14. ^ Yabuuchi, Eiko; Kosako, Yoshimasa; Yano, Ikuya; Hotta, Hisako; Nishiuchi, Yukiko (1995). "Transfer of two Burkholderia and an Alcaligenes species to Ralstonia gen. Nov.: Proposal of Ralstonia pickettii (Ralston, Palleroni and Doudoroff 1973) comb. Nov., Ralstonia solanacearum (Smith 1896) comb. Nov. And Ralstonia eutropha (Davis 1969) comb. Nov". Microbiology and Immunology. 39 (11): 897–904. doi:10.1111/j.1348-0421.1995.tb03275.x. PMID 8657018. S2CID 28187828.
  15. ^ a b c d e f Nikolaidis, Marios; Mossialos, Dimitris; Oliver, Stephen G.; Amoutzias, Grigorios D. (2020-07-24). "Comparative Analysis of the Core Proteomes among the Pseudomonas Major Evolutionary Groups Reveals Species-Specific Adaptations for Pseudomonas aeruginosa and Pseudomonas chlororaphis". Diversity. 12 (8): 289. doi:10.3390/d12080289. ISSN 1424-2818.
  16. ^ Richter, Michael; Rosselló-Móra, Ramon (2009-11-10). "Shifting the genomic gold standard for the prokaryotic species definition". Proceedings of the National Academy of Sciences. 106 (45): 19126–19131. Bibcode:2009PNAS..10619126R. doi:10.1073/pnas.0906412106. ISSN 0027-8424. PMC 2776425. PMID 19855009.
  17. ^ Tran, Phuong N.; Savka, Michael A.; Gan, Han Ming (2017-07-12). "In-silico Taxonomic Classification of 373 Genomes Reveals Species Misidentification and New Genospecies within the Genus Pseudomonas". Frontiers in Microbiology. 8: 1296. doi:10.3389/fmicb.2017.01296. ISSN 1664-302X. PMC 5506229. PMID 28747902.
  18. ^ a b Koehorst, Jasper J.; Dam, Jesse C. J.; van Heck, Ruben G. A.; van Saccenti, Edoardo; Martins dos Santos, Vitor A. P.; Suarez-Diez, Maria; Schaap, Peter J. (2016-12-06). "Comparison of 432 Pseudomonas strains through integration of genomic, functional, metabolic and expression data". Scientific Reports. 6 (1): 38699. Bibcode:2016NatSR...638699K. doi:10.1038/srep38699. ISSN 2045-2322. PMC 5138606. PMID 27922098.
  19. ^ Krieg, Noel (1984). Bergey's Manual of Systematic Bacteriology, Volume 1. Baltimore: Williams & Wilkins. ISBN 0-683-04108-8.
  20. ^ Meyer, Jean-Marie; Geoffroy, Valérie A.; Baida, Nader; Gardan, Louis; Izard, Daniel; Lemanceau, Philippe; Achouak, Wafa; Palleroni, Norberto J. (2002). "Siderophore typing, a powerful tool for the identification of fluorescent and nonfluorescent pseudomonads". Applied and Environmental Microbiology. 68 (6): 2745–2753. Bibcode:2002ApEnM..68.2745M. doi:10.1128/AEM.68.6.2745-2753.2002. PMC 123936. PMID 12039729.
  21. ^ Lau, Gee W.; Hassett, Daniel J.; Ran, Huimin; Kong F, Fansheng (2004). "The role of pyocyanin in Pseudomonas aeruginosa infection". Trends in Molecular Medicine. 10 (12): 599–606. doi:10.1016/j.molmed.2004.10.002. PMID 15567330.
  22. ^ Matthijs, Sandra; Tehrani, Kourosch Abbaspour; Laus, George; Jackson, Robert W.; Cooper, Richard M.; Cornelis, Pierre (2007). "Thioquinolobactin, a Pseudomonas siderophore with antifungal and anti-Pythium activity". Environmental Microbiology. 9 (2): 425–434. Bibcode:2007EnvMi...9..425M. doi:10.1111/j.1462-2920.2006.01154.x. PMID 17222140.
  23. ^ Biello, David (February 28, 2008). "Do Microbes Make Snow?". Scientific American.
  24. ^ Hassett, Daniel J.; Cuppoletti, John; Trapnell, Bruce; Lymar, Sergei V.; et al. (2002). "Anaerobic metabolism and quorum sensing by Pseudomonas aeruginosa biofilms in chronically infected cystic fibrosis airways: rethinking antibiotic treatment strategies and drug targets". Advanced Drug Delivery Reviews. 54 (11): 1425–1443. doi:10.1016/S0169-409X(02)00152-7. PMID 12458153.
  25. ^ a b Ryan, Kenneth J.; Ray, C. George; Sherris, John C., eds. (2004). Sherris Medical Microbiology (4th ed.). McGraw Hill. ISBN 0-8385-8529-9.
  26. ^ Van Eldere, Johan (February 2003). "Multicentre surveillance of Pseudomonas aeruginosa susceptibility patterns in nosocomial infections". Journal of Antimicrobial Chemotherapy. 51 (2): 347–352. doi:10.1093/jac/dkg102. PMID 12562701.
  27. ^ Poole, K (January 2004). "Efflux-mediated multiresistance in Gram-negative bacteria". Clinical Microbiology and Infection. 10 (1): 12–26. doi:10.1111/j.1469-0691.2004.00763.x. PMID 14706082.
  28. ^ "Scientists Discover Clays to Fight Deadly Bacteria". www.infoniac.com. 2007-03-16. Retrieved 2008-11-20.
  29. ^ Smith, Michael (2007-03-16). "Gallium May Have Antibiotic-Like Properties". MedPage Today. Archived from the original on 2008-09-18.
  30. ^ Bodey, Gerald P.; Bolivar, Ricardo; Fainstein, Victor; Jadeja, Leena (1983-03-01). "Infections Caused by Pseudomonas aeruginosa". Clinical Infectious Diseases. 5 (2): 279–313. doi:10.1093/clinids/5.2.279. ISSN 1058-4838. PMID 6405475.
  31. ^ Hardie, Kim R.; Pommier, Stephanie; Wilhelm, Susanne (2009). "The Secreted Proteins of Pseudomonas aeruginosa: Their Export Machineries, and How They Contribute to Pathogenesis". Bacterial Secreted Proteins: Secretory Mechanisms and Role in Pathogenesis. Caister Academic Press. ISBN 978-1-904455-42-4.
  32. ^ Brodey, Catherine L.; Rainey, Paul B.; Tester, Mark; Johnstone, Keith (1991). "Bacterial blotch disease of the cultivated mushroom is caused by an ion channel forming lipodepsipeptide toxin". Molecular Plant-Microbe Interactions. 1 (4): 407–411. doi:10.1094/MPMI-4-407.
  33. ^ Young, J. M. (1970). "Drippy gill: a bacterial disease of cultivated mushrooms caused by Pseudomonas agarici n. sp". New Zealand Journal of Agricultural Research. 13 (4): 977–90. Bibcode:1970NZJAR..13..977Y. doi:10.1080/00288233.1970.10430530.
  34. ^ Haas, Dieter; Défago, Geneviève (2005). "Biological control of soil-borne pathogens by fluorescent pseudomonads". Nature Reviews Microbiology. 3 (4): 307–319. doi:10.1038/nrmicro1129. PMID 15759041. S2CID 18469703.
  35. ^ Chin-A-Woeng TF; Bloemberg, Guido V.; Mulders, Ine H. M.; Dekkers, Linda C.; et al. (2000). "Root colonization by phenazine-1-carboxamide-producing bacterium Pseudomonas chlororaphis PCL1391 is essential for biocontrol of tomato foot and root rot". Mol Plant Microbe Interact. 13 (12): 1340–1345. doi:10.1094/MPMI.2000.13.12.1340. hdl:1887/62881. PMID 11106026.
  36. ^ Esipov, SE; Adanin, VM; Baskunov, BP; Kiprianova, EA; et al. (1975). "Novyĭ antibioticheski aktivnyĭ florogliutsid iz Pseudomonas aurantiaca" [New antibiotically active fluoroglucide from Pseudomonas aurantiaca]. Antibiotiki (in Russian). 20 (12): 1077–81. PMID 1225181.
  37. ^ O’Mahony, Mark M.; Dobson, Alan D. W.; Barnes, Jeremy D.; Singleton, Ian (2006). "The use of ozone in the remediation of polycyclic aromatic hydrocarbon contaminated soil". Chemosphere. 63 (2): 307–314. Bibcode:2006Chmsp..63..307O. doi:10.1016/j.chemosphere.2005.07.018. PMID 16153687.
  38. ^ Yen, K M; Karl, M R; Blatt, L M; Simon, M J; Winter, R B; Fausset, P R; Lu, H S; Harcourt, A A; Chen, K K (1991). "Cloning and characterization of a Pseudomonas mendocina KR1 gene cluster encoding toluene-4-monooxygenase". Journal of Bacteriology. 173 (17): 5315–27. doi:10.1128/jb.173.17.5315-5327.1991. PMC 208241. PMID 1885512.
  39. ^ Huertas, M.-J.; Luque-Almagro, V.M.; Martínez-Luque, M.; Blasco, R.; Moreno-Vivián, C.; Castillo, F.; Roldán, M.-D. (2006). "Cyanide metabolism of Pseudomonas pseudoalcaligenes CECT5344: role of siderophores". Biochemical Society Transactions. 34 (1): 152–5. doi:10.1042/BST0340152. PMID 16417508.
  40. ^ Nojiri, Hideaki; Maeda, Kana; Sekiguchi, Hiroyo; Urata, Masaaki; Shintani, Masaki; Yoshida, Takako; Habe, Hiroshi; Omori, Toshio (2002). "Organization and transcriptional characterization of catechol degradation genes involved in carbazole degradation by Pseudomonas resinovorans strain CA10". Bioscience, Biotechnology, and Biochemistry. 66 (4): 897–901. doi:10.1271/bbb.66.897. PMID 12036072.
  41. ^ Gilani, Razia Alam; Rafique, Mazhar; Rehman, Abdul; Munis, Muhammad Farooq Hussain; Rehman, Shafiq ur; Chaudhary, Hassan Javed (2016). "Biodegradation of chlorpyrifos by bacterial genus Pseudomonas". Journal of Basic Microbiology. 56 (2): 105–119. doi:10.1002/jobm.201500336. ISSN 1521-4028. PMID 26837064. S2CID 1373984.
  42. ^ Nam, IH; Chang, YS; Hong, HB; Lee, YE (2003). "A novel catabolic activity of Pseudomonas veronii in biotransformation of pentachlorophenol". Applied Microbiology and Biotechnology. 62 (2–3): 284–290. doi:10.1007/s00253-003-1255-1. PMID 12883877. S2CID 31700132.
  43. ^ Onaca, Christina; Kieninger, Martin; Engesser, Karl H.; Altenbuchner, Josef (May 2007). "Degradation of alkyl methyl ketones by Pseudomonas veronii". Journal of Bacteriology. 189 (10): 3759–3767. doi:10.1128/JB.01279-06. PMC 1913341. PMID 17351032.
  44. ^ Marqués, Silvia; Ramos, Juan L. (1993). "Transcriptional control of the Pseudomonas putida TOL plasmid catabolic pathways". Molecular Microbiology. 9 (5): 923–929. doi:10.1111/j.1365-2958.1993.tb01222.x. PMID 7934920. S2CID 20663917.
  45. ^ Sepúlveda-Torres, Lycely Del C.; Rajendran, Narayanan; Dybas, Michael J.; Criddle, Craig S. (1999). "Generation and initial characterization of Pseudomonas stutzeri KC mutants with impaired ability to degrade carbon tetrachloride". Archives of Microbiology. 171 (6): 424–429. Bibcode:1999ArMic.171..424D. doi:10.1007/s002030050729. PMID 10369898. S2CID 19916486.
  46. ^ "What Is Pseudomonas Aeruginosa?". WebMD. October 27, 2022. Retrieved 2023-08-07.
  47. ^ a b c Wood, Peter (2021-03-16). "Pseudomonas: How to Treat and Prevent in Commercial Water Systems". Wychwood Water Systems. Retrieved 2023-08-07.
  48. ^ a b c d Dasen, S. E.; LiPuma, J. J.; Kostman, J. R.; Stull, T. L. (1 October 1994). "Characterization of PCR-ribotyping for Burkholderia (Pseudomonas) cepacia". Journal of Clinical Microbiology. 32 (10): 2422–2424. doi:10.1128/JCM.32.10.2422-2424.1994. ISSN 0095-1137. PMC 264078. PMID 7529239.
  49. ^ a b c d e Dogan, Belgin; Boor, Kathryn J. (1 January 2003). "Genetic Diversity and Spoilage Potentials among Pseudomonas spp. Isolated from Fluid Milk Products and Dairy Processing Plants". Applied and Environmental Microbiology. 69 (1): 130–138. Bibcode:2003ApEnM..69..130D. doi:10.1128/AEM.69.1.130-138.2003. ISSN 0099-2240. PMC 152439. PMID 12513987.
  50. ^ a b c Casalinuovo, Ida A.; Di Pierro, Donato; Coletta, Massimiliano; Di Francesco, Paolo (1 November 2006). "Application of Electronic Noses for Disease Diagnosis and Food Spoilage Detection". Sensors. 6 (11): 1428–1439. Bibcode:2006Senso...6.1428C. doi:10.3390/s6111428. PMC 3909407.
  51. ^ a b c d Magan, Naresh; Pavlou, Alex; Chrysanthakis, Ioannis (5 January 2001). "Milk-sense: a volatile sensing system recognises spoilage bacteria and yeasts in milk". Sensors and Actuators B: Chemical. 72 (1): 28–34. doi:10.1016/S0925-4005(00)00621-3.
  52. ^ Pseudomonas in LPSN; Parte, Aidan C.; Sardà Carbasse, Joaquim; Meier-Kolthoff, Jan P.; Reimer, Lorenz C.; Göker, Markus (1 November 2020). "List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ". International Journal of Systematic and Evolutionary Microbiology. 70 (11): 5607–5612. doi:10.1099/ijsem.0.004332.
  53. ^ Anzai, Y; Kim, H; Park, J Y; Wakabayashi, H; Oyaizu, H (2000). "Phylogenetic affiliation of the pseudomonads based on 16S rRNA sequence". International Journal of Systematic and Evolutionary Microbiology. 50 (4): 1563–1589. doi:10.1099/00207713-50-4-1563. ISSN 1466-5034. PMID 10939664.
  54. ^ Jun, Se-Ran; Wassenaar, Trudy M.; Nookaew, Intawat; Hauser, Loren; Wanchai, Visanu; Land, Miriam; Timm, Collin M.; Lu, Tse-Yuan S.; Schadt, Christopher W.; Doktycz, Mitchel J.; Pelletier, Dale A.; Ussery, David W. (2016). "Diversity of Pseudomonas Genomes, Including Populus-Associated Isolates, as Revealed by Comparative Genome Analysis". Applied and Environmental Microbiology. 82 (1): 375–383. Bibcode:2016ApEnM..82..375J. doi:10.1128/AEM.02612-15. ISSN 0099-2240. PMC 4702629. PMID 26519390.
  55. ^ Mulet, Magdalena; Lalucat, Jorge; García-Valdés, Elena (2010). "DNA sequence-based analysis of the Pseudomonas species". Environmental Microbiology. 12 (6): 1513–30. Bibcode:2010EnvMi..12.1513M. doi:10.1111/j.1462-2920.2010.02181.x. PMID 20192968.
  56. ^ Mulet, Magdalena; Gomila, Margarita; Scotta, Claudia; Sánchez, David; Lalucat, Jorge; García-Valdés, Elena (2012). "Concordance between whole-cell matrix-assisted laser-desorption/ionization time-of-flight mass spectrometry and multilocus sequence analysis approaches in species discrimination within the genus Pseudomonas". Systematic and Applied Microbiology. 35 (7): 455–464. doi:10.1016/j.syapm.2012.08.007. ISSN 0723-2020. PMID 23140936.
  57. ^ Gomila, Margarita; Peña, Arantxa; Mulet, Magdalena; Lalucat, Jorge; García-Valdés, Elena (2015). "Phylogenomics and systematics in Pseudomonas". Frontiers in Microbiology. 6: 214. doi:10.3389/fmicb.2015.00214. ISSN 1664-302X. PMC 4447124. PMID 26074881.
  58. ^ Hesse, Cedar; Schulz, Frederik; Bull, Carolee T.; Shaffer, Brenda T.; Yan, Qing; Shapiro, Nicole; Hassan, Karl A.; Varghese, Neha; Elbourne, Liam D. H.; Paulsen, Ian T.; Kyrpides, Nikos; Woyke, Tanja; Loper, Joyce E. (2018). "Genome-based evolutionary history of Pseudomonas spp". Environmental Microbiology. 20 (6): 2142–2159. Bibcode:2018EnvMi..20.2142H. doi:10.1111/1462-2920.14130. ISSN 1462-2912. OSTI 1529110. PMID 29633519. S2CID 4737911.
  59. ^ Girard, Léa; Lood, Cédric; Höfte, Monica; Vandamme, Peter; Rokni-Zadeh, Hassan; van Noort, Vera; Lavigne, Rob; De Mot, René (2021). "The Ever-Expanding Pseudomonas Genus: Description of 43 New Species and Partition of the Pseudomonas putida Group". Microorganisms. 9 (8): 1766. doi:10.3390/microorganisms9081766. ISSN 2076-2607. PMC 8401041. PMID 34442845.
  60. ^ Van Landschoot, A.; Rossau, R.; De Ley, J. (1986). "Intra- and Intergeneric Similarities of the Ribosomal Ribonucleic Acid Cistrons of Acinetobacter". International Journal of Systematic Bacteriology. 36 (2): 150. doi:10.1099/00207713-36-2-150.
  61. ^ Girard L, Lood C, Höfte M, Vandamme P, Rokni-Zadeh H, van Noort V, Lavigne R, De Mot R. (2021). "The Ever-Expanding Pseudomonas Genus: Description of 43 New Species and Partition of the Pseudomonas putida Group". Microorganisms. 9 (8): 1766. doi:10.3390/microorganisms9081766. PMC 8401041. PMID 34442845.
  62. ^ Yi B, Dalpke AH. (2022). "Revisiting the intrageneric structure of the genus Pseudomonas with complete whole genome sequence information: Insights into diversity and pathogen-related genetic determinants". Infect Genet Evol. 97: 105183. doi:10.1016/j.meegid.2021.105183. PMID 34920102. S2CID 245180021. Note that the tree in this reference has the same topology, but looks different because it is unrooted.
  63. ^ a b Hertveldt, K.; Lavigne, R.; Pleteneva, E.; Sernova, N.; Kurochkina, L.; Korchevskii, R.; Robben, J.; Mesyanzhinov, V.; Krylov, V. N.; Volckaert, G. (2005). "Genome Comparison of Pseudomonas aeruginosa Large Phages" (PDF). Journal of Molecular Biology. 354 (3): 536–545. doi:10.1016/j.jmb.2005.08.075. PMID 16256135. Archived from the original (PDF) on 2016-03-04. Retrieved 2015-08-27.
  64. ^ Lavigne, Rob; Noben, Jean-Paul; Hertveldt, Kirsten; Ceyssens, Pieter-Jan; Briers, Yves; Dumont, Debora; Roucourt, Bart; Krylov, Victor N.; Mesyanzhinov, Vadim V.; Robben, Johan; Volckaert, Guido (2006). "The structural proteome of Pseudomonas aeruginosa bacteriophage ϕKMV". Microbiology. 152 (2): 529–534. doi:10.1099/mic.0.28431-0. ISSN 1465-2080. PMID 16436440.
  65. ^ a b Ceyssens, Pieter-Jan; Lavigne, Rob; Mattheus, Wesley; Chibeu, Andrew; Hertveldt, Kirsten; Mast, Jan; Robben, Johan; Volckaert, Guido (2006). "Genomic Analysis of Pseudomonas aeruginosa Phages LKD16 and LKA1: Establishment of the φKMV Subgroup within the T7 Supergroup". Journal of Bacteriology. 188 (19): 6924–6931. doi:10.1128/JB.00831-06. ISSN 0021-9193. PMC 1595506. PMID 16980495.
  66. ^ Lee, Lucy F.; Boezi, J. A. (1966). "Characterization of bacteriophage gh-1 for Pseudomonas putida". Journal of Bacteriology. 92 (6). American Society for Microbiology: 1821–1827. doi:10.1128/JB.92.6.1821-1827.1966. PMC 316266. PMID 5958111.
  67. ^ Buchanan, R. E. (1955). "Taxonomy". Annual Review of Microbiology. 9: 1–20. doi:10.1146/annurev.mi.09.100155.000245. PMID 13259458.
[edit]
Wikimedia Commons has media related to Pseudomonas.

General

[edit]
Retrieved from "https://en.wikipedia.org/w/index.php?title=Pseudomonas&oldid=1249894731"